[BioC] installing 'lme4' package fails

Kasper Daniel Hansen kasperdanielhansen at gmail.com
Tue Jul 6 18:16:47 CEST 2010


Be aware that this package does not pass make check on OS X; there has
been some discussion of this on the R-sig-mac list, but I have not
paid much attention since I don't use it.

Kasper

On Tue, Jul 6, 2010 at 7:59 AM, Tim Smith <tim_smith_666 at yahoo.com> wrote:
> Hi,
>
> I was trying to install the lme4 package, but the installation fails. Here are my commands and output, alongwith the sessionInfo:
>
>> source("http://bioconductor.org/biocLite.R")
> BioC_mirror = http://www.bioconductor.org
> Change using chooseBioCmirror().
> Warning messages:
> 1: In safeSource() : Redefining ‘biocinstall’
> 2: In safeSource() : Redefining ‘biocinstallPkgGroups’
> 3: In safeSource() : Redefining ‘biocinstallRepos’
>> biocLite("lme4")
> Using R version 2.11.1, biocinstall version 2.6.7.
> Installing Bioconductor version 2.6 packages:
> [1] "lme4"
> Please wait...
>
> Warning in install.packages(pkgs = pkgs, repos = repos, ...) :
>  argument 'lib' is missing: using '/Users/ts/Library/R/2.11/library'
> Warning message:
> In getDependencies(pkgs, dependencies, available, lib) :
>  package ‘lme4’ is not available
>
>> sessionInfo()
> R version 2.11.1 (2010-05-31)
> x86_64-apple-darwin9.8.0
>
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> loaded via a namespace (and not attached):
> [1] tools_2.11.1
>>
>
> Should I be passing in some other parameters too?
>
> thanks,
>
>
>
>
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>
>
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