[BioC] Patch for sortBam functionality in Rsamtools

[Martin Morgan]

Thomas Unterthiner <thomas.unterthiner at students.jku.at> writes:

> Hi there!
> Attached to this mail you'll find a patch that adds a "sortBam"
> function to Rsamtools, which provides the functionality  of to the
> "samtools sort" tool.
>
> The patch was made using R-devel version 2.12.0 (2010-07-21 r52595)
> against the Bioconductor SVN trunk rev.   48321 (checked out
> 2010-07-22). I'd appreciate it if the patch could be integrated into
> the next Rsamtools release (provided it meets the necessary quality
> criteria, that is ;) ). Also, any criticism of any kind is welcome as
> well. :)

Hi Thomas -- attachments get stripped from the mailing list; feel free
to forward to me directly. Looking forward to your contribution! Martin

> Cheers
>
> Thomas
>
>
>
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-- 
Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
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