[BioC] xmapcore get intronic sequence

[Stephen Taylor]

Hi,

Is there a method in xmapcore to get part of the sequence of the adjoining intron given an exon id?

For example:

 > exon.details("ENSE00001146308")
RangedData with 1 row and 5 value columns across 1 space
         space             ranges |       stable_id    strand     phase
   <character>          <IRanges> |     <character> <integer> <integer>
1          17 [7590695, 7590856] | ENSE00001146308        -1        -1
   end_phase
   <integer>
1        -1
 
                                      sequence
 
                                   <character>
1 
GTTTTCCCCTCCCATGTGCTCAAGACTGGCGCTAAAAGTTTTGAGCTTCTCAAAAGTCTAGAGCCACCGTCCAGGGAGCAGGTAGCTGCTGGGCTCCGGGGACACTTTGCGTTCGGGCTGGGAGCGTGCTTTCCACGACGGTGACACGCTTCCCTGGATTGG


I'd like to get chr17:7590695-7590863

Thanks,

Steve