[BioC] duplicatecorrelations

David martin vilanew at gmail.com
Fri Jun 4 11:30:43 CEST 2010

I have an array where all printed spots are duplicate. I also have 
duplicated controls per array block.
In total 32 block tant contains each time 2 probes of the same control. 
For the rest of the array all the other printed spots are duplicated once.

Every time probes are next to each other.

I apply the following function:
corfit <- duplicateCorrelation(mat, design, ndups=2)

it seems to work properly but i'm not sure how my controls are handled ?

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