[BioC] Using Gostats on a new organism

michael watson (IAH-C) michael.watson at bbsrc.ac.uk
Tue Jun 15 12:31:10 CEST 2010


This may not help you with GOstats, but we have example code on our website on how to use topGO:


From: bioconductor-bounces at stat.math.ethz.ch [bioconductor-bounces at stat.math.ethz.ch] On Behalf Of January Weiner [january.weiner at mpiib-berlin.mpg.de]
Sent: 15 June 2010 11:19
To: BioC
Subject: [BioC] Using Gostats on a new organism

Dear all,

I am fighting with the GOStats vignettes and the corresponding
chapters from the Springer books, and I'm lost.

I have a genome (and corresponding arrays) of an organism, along with
GO assignments. I'd like to run an enrichment analysis. GOStats seems
to need the db packages, is that correct? Is there another way of
running it?

I would be grateful for any links or hints for further reading.

Best regards,


P.S. I'd like to thank here for all who have helped me before; I don't
want to clutter the discussions with countless "thank you" e-mails :-)

-------- Dr. January Weiner 3 --------------------------------------
Max Planck Institute for Infection Biology
Charitéplatz 1
D-10117 Berlin, Germany
Web   : www.mpiib-berlin.mpg.de
Tel     : +49-30-28460514

Bioconductor mailing list
Bioconductor at stat.math.ethz.ch
Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor

More information about the Bioconductor mailing list