[BioC] AgiMicroRNA and Extra columns in Agilent Mouse miRNA Microarray Release 12.0 G4471A-021828.

Richard Friedman friedman at cancercenter.columbia.edu
Wed Jun 16 22:19:33 CEST 2010

Dear Pedro and List,

	My text files form Agilent  Mouse miRNA Microarray Release 12.0  
G4471A-021828 has two extra columns which are not
in  GSE19232  Agilent human microRNA array v 2.0 (G44708) - "start"  
and "sequence". When these are deleted
AgiMicroRNA  works. I do not know if this is due to the array or  
software or processing options on the software.
This clears up the problem with maMicroRna( which i have been writing  
you about. It would be nice if
this could be taken into  automatically in a future version of  
AgiMicroRNA, but this solves my porblem for now.

Thanks and best wishes,
Richard A. Friedman, PhD
Associate Research Scientist,
Biomedical Informatics Shared Resource
Herbert Irving Comprehensive Cancer Center (HICCC)
Department of Biomedical Informatics (DBMI)
Educational Coordinator,
Center for Computational Biology and Bioinformatics (C2B2)/
National Center for Multiscale Analysis of Genomic Networks (MAGNet)
Room 824
Irving Cancer Research Center
Columbia University
1130 St. Nicholas Ave
New York, NY 10032
(212)851-4765 (voice)
friedman at cancercenter.columbia.edu

In Memoriam,
George Scithers

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