[BioC] DNA-Methylation, CopyNumber Results

Chao-Jen Wong cwon2 at fhcrc.org
Thu Jun 17 22:43:32 CEST 2010

As for Illumina Infinium methylation data, you can use the methylumi
package to  manipulate the data and perform quality control and
normalization. Subsequently use limma to do differential methylation

On 06/16/10 19:22, Noemi Andor wrote:
> Hi,
> I need to parse some raw Methylation data from Illumina (Infinium) and some copy number results (CGH, high amount of data). I would be grateful for any useful information like which bioconducter packages to use, alternative tools, normalization. 
> thank's in advance,
> Noemi
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Chao-Jen Wong
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Avenue N., M1-B514
PO Box 19024
Seattle, WA 98109
cwon2 at fhcrc.org

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