[BioC] selection of dif.exp.genes defining FDR in SAM

Holger Schwender holger.schw at gmx.de
Mon Jun 21 19:01:24 CEST 2010

If you use the R package siggenes, the function findDelta does the trick.


-------- Original-Nachricht --------
> Datum: Mon, 21 Jun 2010 17:14:26 +0100
> Von: "Hernando Martínez" <hernybiotec at gmail.com>
> An: Bioconductor at stat.math.ethz.ch
> Betreff: [BioC] selection of dif.exp.genes defining FDR in SAM

> Hi, I am using SAM to identify differentially expressed genes in a set of
> microarrays, but I want to select a value of False Discovery Rate for the
> cut-off instead of using the delta. Does anyone know which parameter to
> introduce to do so? Or any function to get the delta for a specific FDR?
> Thank you all,
> -- 
> Hernando Martínez Vergara
> 	[[alternative HTML version deleted]]

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