[BioC] Error using GEOquery package

Sean Davis seandavi at gmail.com
Mon May 3 20:49:49 CEST 2010


On Mon, May 3, 2010 at 10:28 AM, Rahul Sharma <rahularjun86 at gmail.com> wrote:
> Hi,
>  Following is the error when i try to use the Bioconductor GEOquery
> Package,
>
>
>> gds3224=getGEO(filename="GDS3224.soft.gz")
> Error in read.table(con, sep = "\t", header = FALSE, nrows = nseries) :
>  invalid 'nlines' argument

Hi, Rahul.

I am not able to reproduce this error with the current GEOquery
package.  If you are not using the newest version of R and
Bioconductor, could you try upgrading?  If you still have problems
after doing so, let me know and be sure to include the output of
sessionInfo().

Thanks,
Sean



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