[BioC] Rgraphviz crashes Windows

Hervé Pagès hpages at fhcrc.org
Tue May 4 20:09:44 CEST 2010


Hi Sancar,

sessionInfo() please?

Sancar Adali wrote:
> I've installed Rgraphviz from source using Graphviz version 2.20.3. I'm 
> using Windows Vista 64-bit and R 2.10.1.

Using R 2.10.1 means you are using BioC 2.5 which is not the current
BioC release (hence no more support). Please upgrade to R 2.11 and
reinstall BioC with biocLite(). biocLite() will automatically grab
the correct version of BioC (i.e. BioC 2.6, released 10 days ago).

Cheers,
H.

> However R crashes (as a standard windows application crashes with "R 
> stopped working" messages) when I use "plot" function. For example 
> running the following code crashes R.
> 
>   V<- letters[1:10]
>   M<- 1:4
>   g1<- randomGraph(V, M, .2)
>   plot(g1)
> 
> I have the same problem  in Windows 7. The same problem when I  install 
> the Rgraphviz binary package
> 
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-- 
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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