[BioC] biocLite() partial install of pakcages issue

Martin Morgan mtmorgan at fhcrc.org
Fri Nov 5 19:06:33 CET 2010


On 11/05/2010 11:06 AM, km wrote:
> Hi all,
> 
> I notice that when  I install bioconductor, biocLite() call fails  to
> fetch some packages. But it installs some packages at the end of the
> installation.
> Now if I run biocLite() again, I expect it to skip installed pakages
> and retry fetching those packages not installed.
> Surprisingly, biocLite() fetches  starts the process of installing all
> packages, even if installed, serially and attempts to install them.
> Is there a  way to just make it just install those packages skipped
> during previous install ?

sessionInfo() and copy / paste an actual example, please. Martin

> 
> regards,
> KM
> 
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