[BioC] Illumina human HT12 v3. microarray

Pradeep Battula prabat at utu.fi
Sun Nov 7 22:36:35 CET 2010


Dear All,

I want to write a function that performs hypergeometric test for over representation against GO and KEGG, for the given example of data of
background.Datat: Entrez identifiers of all probes present on Illumina human HT12 v3. microarray
DEgenes.Data: Differentially expressed genes in a real study carried out on Illumina HT12 v3. microarray

But, the relevant documentation provided in "GOstats" and "topGO" are explained using a microarray data set  from a clinical trial in acute lymphoblastic leukemia (ALL).

Now, I want to know, what are the changes/terms I have to insert, to apply the same to my available data.

  Could anyone please help me....Thanking All.

Regards,
Pradee.



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