[BioC] R hanging up on install of BioConductor

[Hollis Wright]

For what it's worth, the Fred Hutch mirror does seem to be agonizingly slow for me at the moment. I switched to the Bethesda mirror with chooseBioCMirror and setRepositories and it is installing at 
normal speed. Could be worth a try. 

Hollis Wright, PhD
Oregon Clinical and Translational Research Institute
________________________________________
From: bioconductor-bounces at stat.math.ethz.ch [bioconductor-bounces at stat.math.ethz.ch] On Behalf Of Vincent Carey [stvjc at channing.harvard.edu]
Sent: Tuesday, October 05, 2010 11:01 AM
To: ANJAN PURKAYASTHA
Cc: bioconductor at stat.math.ethz.ch
Subject: Re: [BioC] R hanging up on install of BioConductor

There is no evidence of a problem at the bioc server end, so you need
to consider your
network connectivity.  Try to work within R, using install.packages,
to acquire something small
like

install.packages("ash")

R "hanging" might indicate that you don't have sufficient connectivity
to complete the transaction;
it is not a bioconductor issue.  Various issues regarding the roles of
proxies are reviewed in the
documentation retrieved with ?download.file in R

On Tue, Oct 5, 2010 at 12:14 PM, ANJAN PURKAYASTHA
<anjan.purkayastha at gmail.com> wrote:
> Hi,
> Am working on  Mac OS X 10.5.8. Just installed R 2.11.1.
> Tried to install the base packages of Bioconductor with :
>
> source("http://bioconductor.org/biocLite.R")
> biocLite()
>
>
> R hangs while downloading the various modules.   Have tried it multiple
> times (after multiple reinstalls of R) - no success.  Anybody else having
> this problem?
> Thanks,
> Anjan
>
>
>
>
> --
> ===================================
> anjan purkayastha, phd.
> research associate
> fas center for systems biology,
> harvard university
> 52 oxford street
> cambridge ma 02138
> phone-703.740.6939
> ===================================
>
>        [[alternative HTML version deleted]]
>
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