[BioC] svn version of rtracklayer error

[Martin Morgan]

On 10/18/2010 03:15 AM, Michael Dondrup wrote:
> Hi,
> 
> I am trying to install the the latest rtracklayer version from svn, it's revision 50298.
> 
> But that doesn't install: 
> ** testing if installed package can be loaded
> Error in dyn.load(file, DLLpath = DLLpath, ...) : 
>   unable to load shared library '/Library/Frameworks/R.framework/Resources/library/rtracklayer/libs/x86_64/rtracklayer.so':
>   dlopen(/Library/Frameworks/R.framework/Resources/library/rtracklayer/libs/x86_64/rtracklayer.so, 6): Symbol not found: _new_CHARACTER_from_CharAEAE

I would guess that your version of IRanges (and other dependencies /
imports?) is out of date with respect to rtracklayer.

Martin

>   Referenced from: /Library/Frameworks/R.framework/Resources/library/rtracklayer/libs/x86_64/rtracklayer.so
>   Expected in: flat namespace
>  in /Library/Frameworks/R.framework/Resources/library/rtracklayer/libs/x86_64/rtracklayer.so
> 
> 
> 
>> sessionInfo()
> R version 2.11.1 (2010-05-31) 
> x86_64-apple-darwin9.8.0 
> 
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
> 
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base     
>>
> 
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