[BioC] svn version of rtracklayer error

[Michael Dondrup]

On Oct 18, 2010, at 3:32 PM, Martin Morgan wrote:

> On 10/18/2010 03:15 AM, Michael Dondrup wrote:
>> Hi,
>> 
>> I am trying to install the the latest rtracklayer version from svn, it's revision 50298.
>> 
>> But that doesn't install: 
>> ** testing if installed package can be loaded
>> Error in dyn.load(file, DLLpath = DLLpath, ...) : 
>>  unable to load shared library '/Library/Frameworks/R.framework/Resources/library/rtracklayer/libs/x86_64/rtracklayer.so':
>>  dlopen(/Library/Frameworks/R.framework/Resources/library/rtracklayer/libs/x86_64/rtracklayer.so, 6): Symbol not found: _new_CHARACTER_from_CharAEAE
> 
> I would guess that your version of IRanges (and other dependencies /
> imports?) is out of date with respect to rtracklayer.
> 
Yes, I think you are right. Do I have to update to R 2.12.0 in general, or to the svn version of R and Bioconductor even? 




> Martin
> 
>>  Referenced from: /Library/Frameworks/R.framework/Resources/library/rtracklayer/libs/x86_64/rtracklayer.so
>>  Expected in: flat namespace
>> in /Library/Frameworks/R.framework/Resources/library/rtracklayer/libs/x86_64/rtracklayer.so
>> 
>> 
>> 
>>> sessionInfo()
>> R version 2.11.1 (2010-05-31) 
>> x86_64-apple-darwin9.8.0 
>> 
>> locale:
>> [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
>> 
>> attached base packages:
>> [1] stats     graphics  grDevices utils     datasets  methods   base     
>>> 
>> 
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> 
> 
> -- 
> Computational Biology
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> 
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Michael Dondrup
Post-doctoral researcher
Uni BCCS
Thormøhlensgate 55, N-5008 Bergen, Norway
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