[BioC] Error loading ArrayExpress in R 2.12 Mac

Michael Dondrup Michael.Dondrup at uni.no
Thu Oct 21 13:46:36 CEST 2010

I am trying to load package ArrayExpress, but:

> biocLite("ArrayExpress")
Using R version 2.12.0, biocinstall version 2.7.4.
Installing Bioconductor version 2.7 packages:
[1] "ArrayExpress"
Please wait...

trying URL 'http://www.bioconductor.org/packages/2.7/bioc/bin/macosx/leopard/contrib/2.12/ArrayExpress_1.10.0.tgz'
Content type 'application/x-gzip' length 162415 bytes (158 Kb)
opened URL
downloaded 158 Kb

> library(ArrayExpress)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/Library/Frameworks/R.framework/Versions/2.12/Resources/library/preprocessCore/libs/x86_64/preprocessCore.so':
  dlopen(/Library/Frameworks/R.framework/Versions/2.12/Resources/library/preprocessCore/libs/x86_64/preprocessCore.so, 6): Library not loaded: /Library/Frameworks/R.framework/Versions/2.11/Resources/lib/libR.dylib
  Referenced from: /Library/Frameworks/R.framework/Versions/2.12/Resources/library/preprocessCore/libs/x86_64/preprocessCore.so
  Reason: image not found
Error: package/namespace load failed for 'ArrayExpress'

This reminds me to an error reported earlier about the bioconductor MacOS build, but I thought that was fixed. Or is it a missing dependency?


> sessionInfo()
R version 2.12.0 (2010-10-15)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] Biobase_2.10.0

loaded via a namespace (and not attached):
[1] affyio_1.18.0 limma_3.6.0   tools_2.12.0  XML_3.2-0    

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