[BioC] Error while ChIPpeakAnno installation

[Zhu, Lihua (Julie)]

Prashantha,

You are using old version of R and bioconductor.

Could you please update to R 2.11 and Bioc 2.6, or R 2.11 and Bioc 2.7?
Please let me know if you still have problem. Thanks!

Best regards,

Julie


On 10/21/10 3:37 AM, "Prashantha Hebbar" <prashantha.hebbar at yahoo.com>
wrote:

> Dear Friends,
> I found an error during ChIPpeakAnno installation. Following is that error
> message.
> 
>> biocLite("ChIPpeakAnno")
> Using R version 2.9.2, biocinstall version 2.4.13.
> Installing Bioconductor version 2.4 packages:
> [1] "ChIPpeakAnno"
> Please wait...
> 
> Warning in install.packages(pkgs = pkgs, repos = repos, dependencies =
> dependencies,  :
>   argument 'lib' is missing: using
> '/home/kiradi/R/i486-pc-linux-gnu-library/2.9'
> Warning message:
> In getDependencies(pkgs, dependencies, available, lib) :
>   package ŒChIPpeakAnno¹ is not available
> 
> Required dependencies such as BiomaRt, IRanges, Limma etc have been installed,
> properly. So, can you please suggest what could be the solution to make it up
> and run?
> Thanking you in anticipation.
> Regards,
> Prashantha
> 
> 
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