[BioC] GEOquery: Best way to get a phenodata table from GSE

Daniel Brewer daniel.brewer at icr.ac.uk
Tue Oct 26 11:38:17 CEST 2010


For a particular GSE set I have downloaded all the raw data but I would
like to be able to extract all the phenodata associated with each sample
into a table so I can use it in the analysis.  4.1 of the manual shows a
way of getting what I want but I would have to download the whole GSE
matrix.  Is there a way of getting just the meta data?



Daniel Brewer, Ph.D.

Institute of Cancer Research
Molecular Carcinogenesis
Email: daniel.brewer at icr.ac.uk

The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP.

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