[BioC] gene-locations

James W. MacDonald jmacdon at med.umich.edu
Tue Oct 26 15:10:14 CEST 2010

Hi Noemi,

On 10/26/2010 3:21 AM, Noemi Andor wrote:
> Hello,
> I have a question regarding the mapping of genes to their chromosomal
> locations. I'm using the expression data from affymetrix with probes
> attributed to the Hthgu133ahsrefseq - CDF files
> (http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/13.0.0/refseq.asp).
> On the other hand I'm using CNV-data from agilent (Agilent Human
> Genome CGH Microarray Kit 244K). I would like to assess the impact of
> CNV on expression - how could I find out on which genome assembly the
> mappings are based  (hg 17/18/19), i.e. if they are compatible?




> thank's
> Noemi
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James W. MacDonald, M.S.
Douglas Lab
University of Michigan
Department of Human Genetics
5912 Buhl
1241 E. Catherine St.
Ann Arbor MI 48109-5618
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