[BioC] how to give input to geneAnswer
g-feng at northwestern.edu
Thu Sep 30 18:22:09 CEST 2010
Just like steve stated, you can find the description in vignette about
how to build a geneInput for GeneAnswers.
Basically, the essential input is a vector of genes (Current version
only supports Entrez IDs). But if you have any values associated with
these genes, like foldchange, p-value, etc, the input can be a matrix or
dataframe. In this case, the 1st column is always for gene Entrez IDs.
You can find a case by this:
GeneID foldChange pValue
374 374 17.553825 1.241073e-11
2289 2289 10.549139 5.513686e-14
10563 10563 10.688601 1.073456e-10
687 687 6.112663 1.351898e-09
80149 80149 4.939585 6.473841e-09
5033 5033 4.265287 1.341238e-06
row names can be null.
On 9/30/10 7:50 AM, Steve Lianoglou wrote:
> On Thu, Sep 30, 2010 at 4:07 AM, Budhayash Gautam
> <budhayashgautam at gmail.com> wrote:
>> hello everyone
>> please tell me that how can we give input or
>> in what manner we can give input to geneanswer
>> thanks in advance
> Did you read through the vignette for the package?
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