[BioC] Biobase 2.8 with R 2.13.0 fails on my Mac

[Janet Young]

Hi,

Thanks for the new version - I'm looking forward to using it.  I've installed it fine on the 
linux machine I use, but not on Mac - I'm not sure if it's a problem with R, or with 
Biobase, or with my setup (do I need to to try harder to get rid of R-2.12?).  I think 
I've given all the relevant information below.

all the best,

Janet




> source("http://www.bioconductor.org/biocLite.R")
BioC_mirror = http://bioconductor.org
Change using chooseBioCmirror().
> biocLite("Biobase")
Using R version 2.13.0, biocinstall version 2.8.3.
Installing Bioconductor version 2.8 packages:
[1] "Biobase"
Please wait...

trying URL 
'http://bioconductor.org/packages/2.8/bioc/bin/macosx/leopard/contrib/2.13/Biobase_2.12.0.tgz'
Content type 'application/x-gzip' length 2427717 bytes (2.3 Mb)
opened URL
==================================================
downloaded 2.3 Mb


The downloaded packages are in
	/var/folders/z5/z5O6DCxcG60UeeZiA7+v1E+++Tc/-Tmp-//RtmpP6YQAN/downloaded_packages
> library(Biobase)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object 
'/Library/Frameworks/R.framework/Versions/2.13/Resources/library/Biobase/libs/i386/Biobase.so':
  
dlopen(/Library/Frameworks/R.framework/Versions/2.13/Resources/library/Biobase/libs/i386/Biobase.
so, 6): Library not loaded: /Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libR.dylib
  Referenced from: 
/Library/Frameworks/R.framework/Versions/2.13/Resources/library/Biobase/libs/i386/Biobase.so
  Reason: image not found
Error: package/namespace load failed for 'Biobase'



> sessionInfo()
R version 2.13.0 (2011-04-13)
Platform: i386-apple-darwin9.8.0/i386 (32-bit)

locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] tools_2.13.0