[BioC] DEXSeq availability

Wyatt McMahon [guest] guest at bioconductor.org
Mon Dec 5 21:58:24 CET 2011


I'm trying to install DEXSeq using the code that I have copied from many places:
source("http://bioconductor.org/biocLite.R")
biocLite("DEXSeq")

The message I always receive following the second command is:
Using R version 2.13.0, biocinstall version 2.8.4.
Installing Bioconductor version 2.8 packages:
[1] "DEXSeq"
Please wait...

Warning message:
In getDependencies(pkgs, dependencies, available, lib) :
  package ‘DEXSeq’ is not available (for R version 2.13.0)

I have also tried installing it using a zip file and get the following:
Error: package 'Biobase' required by 'DEXSeq' could not be found
In addition: Warning message:
package 'DEXSeq' was built under R version 2.15.0

 -- output of sessionInfo(): 

> sessionInfo()
R version 2.13.0 (2011-04-13)
Platform: i386-pc-mingw32/i386 (32-bit)

locale:
[1] LC_COLLATE=English_United States.1252 
[2] LC_CTYPE=English_United States.1252   
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C                          
[5] LC_TIME=English_United States.1252    

attached base packages:
[1] grid      stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
 [1] DEGseq_1.6.2        samr_2.0            matrixStats_0.2.2  
 [4] R.methodsS3_1.2.1   impute_1.26.0       ShortRead_1.10.4   
 [7] Rsamtools_1.4.2     lattice_0.19-23     Biostrings_2.20.1  
[10] GenomicRanges_1.4.6 IRanges_1.10.4      gplots_2.8.0       
[13] caTools_1.12        bitops_1.0-4.1      gdata_2.8.2        
[16] gtools_2.6.2        qvalue_1.26.0 

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