[BioC] Can not invoke Ruuid package in updated Mac OS X

[Vincent Carey]

You are missing basic development infrastructure on your MacOSX.
There are various ways to remedy this if you have administration
privileges.  If you install the fink package distribution system at

http://www.finkproject.org/

and then do

sudo fink install glib glib2-dev

you should make progress.

On Mon, Feb 7, 2011 at 3:10 AM, Mao Jianfeng <jianfeng.mao at gmail.com> wrote:
> Dear listers,
>
> I installed Ruuid package in Mac OS X, but it can be invoke. Could you
> please give me any directions?
>
> Thanks in advance.
>
> ############################################(1) installation
>> source("http://bioconductor.org/biocLite.R")
> BioC_mirror = http://www.bioconductor.org
> Change using chooseBioCmirror().
>> biocLite('Ruuid')
> Using R version 2.12.1, biocinstall version 2.7.4.
> Installing Bioconductor version 2.7 packages:
> [1] "Ruuid"
> Please wait...
>
> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/bin/macosx/leopard/contrib/2.12/Ruuid_1.28.0.tgz'
> Content type 'application/x-gzip' length 84154 bytes (82 Kb)
> opened URL
> ==================================================
> downloaded 82 Kb
>
>
> The downloaded packages are in
>        /var/folders/Ic/IcbLL0ELH9uqwZPaFP9Nz++++TQ/-Tmp-//Rtmpiwx1Ik/downloaded_packages
>
> ############################################(2) invoking
>> library(Ruuid)
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>  unable to load shared object
> '/Library/Frameworks/R.framework/Versions/2.12/Resources/library/Ruuid/libs/x86_64/Ruuid.so':
>  dlopen(/Library/Frameworks/R.framework/Versions/2.12/Resources/library/Ruuid/libs/x86_64/Ruuid.so,
> 6): Library not loaded:
> /Library/Frameworks/GTK+.framework/Versions/2.18.X11/Resources/lib/libglib-2.0.0.dylib
>  Referenced from:
> /Library/Frameworks/R.framework/Versions/2.12/Resources/library/Ruuid/libs/x86_64/Ruuid.so
>  Reason: image not found
> Error: package/namespace load failed for 'Ruuid'
>
> ############################################(3) sessionInfo() and version
>> sessionInfo()
> R version 2.12.1 (2010-12-16)
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>
> locale:
> [1] C/UTF-8/C/C/C/C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> loaded via a namespace (and not attached):
> [1] tools_2.12.1
>> version
>               _
> platform       x86_64-apple-darwin9.8.0
> arch           x86_64
> os             darwin9.8.0
> system         x86_64, darwin9.8.0
> status
> major          2
> minor          12.1
> year           2010
> month          12
> day            16
> svn rev        53855
> language       R
> version.string R version 2.12.1 (2010-12-16)
>
>
> --
> Jian-Feng, Mao
>
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