[BioC] need helps on Error when package GGtools loading in Mac OSX and Linux server

Mao Jianfeng jianfeng.mao at gmail.com
Mon Feb 7 17:54:17 CET 2011


Dear Vincent,

Thanks a lot. I have got GGtools installed in my Mac book pro (with
updated Mac OS and Xcode).

What I have done:
(1). install fink in order to let all unix program run in Mac,
following the manual in fink website (http://www.finkproject.org/).

(2). then, run "sudo fink install glib glib2-dev".

(3). next, log in R, and
source("http://bioconductor.org/biocLite.R")
biocLite("Ruuid", type="source") # you must install Ruuid from source.
biocLite("GGtools")

(4). invoke GGtools
library(GGtools)

I need to mention that all my progresses were got under helps of Mr.
Vincent and Martin, especially Vincent has given me much.

Thanks a lot.

Best,
Jian-Feng,



2011/2/7 Vincent Carey <stvjc at channing.harvard.edu>:
> Here I will address both operating systems; I missed the linux in the
> first email.
>
> The failure on the linux server concerns lack of curl and XML
> infrastructure -- these error messages are reasonably clear:
>
> * installing *source* package ‘RCurl’ ...
> checking for curl-config... no
> Cannot find curl-config
> ERROR: configuration failed for package ‘RCurl’
> * removing ‘/ebio/abt6/jmao/rpacks/RCurl’
> * installing *source* package ‘XML’ ...
> checking for gcc... gcc
> checking for C compiler default output file name... a.out
> checking whether the C compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc accepts -g... yes
> checking for gcc option to accept ISO C89... none needed
> checking how to run the C preprocessor... gcc -E
> checking for sed... /bin/sed
> checking for pkg-config... /usr/bin/pkg-config
> checking for xml2-config... no
> Cannot find xml2-config
>
> so you will have to work with a sysadmin to obtain curl development resources
>
> http://curl.haxx.se/download.html
>
> and libxml2 development resources from
>
> http://xmlsoft.org/
>
> Ideally the resources will be installed in "standard" locations and
> the default source installation activities of biocLite() will lead to
> successful installation of RCurl and XML packages.  Otherwise you will
> have to set PKG_CONFIG_PATH suitably.
>
> For the MacOSX I have asked you to do
>
> biocLite("Ruuid", type="source")
>
> if that succeeds, please do
>
> library(Ruuid)
>
> and show all the results.  I suspect the installation will fail and we
> will discover what infrastructure elements are missing.
>
>
> On Mon, Feb 7, 2011 at 5:12 AM, Mao Jianfeng <jianfeng.mao at gmail.com> wrote:
>> Dear Vincent,
>>
>> I have the most upgraded Mac OS with most upgraded Xcode in my mac
>> book pro, when I reported the error at the first email.
>>
>> I am not good at computer. Please help me.
>>
>> Also, the same problem occurred for Linux server, as I showed in my
>> first email. Not only it is in Mac OS. I have not test it in Windows.
>> May I do it hours later.
>>
>> Looking forwards to your reply.
>>
>> Jian-Feng,
>>
>>
>>
>>
>> 2011/2/7 Vincent Carey <stvjc at channing.harvard.edu>:
>>> http://developer.apple.com/technologies/tools/xcode.html
>>>
>>> without Xcode (which is distributed with the MacOSX install disk as an
>>> additional package) you cannot build R packages from source, and in
>>> particular Ruuid is unlikely to be usable.  You should be able to get
>>> a copy of Xcode tools for free from apple.com, but it is if I recall
>>> correctly a download of several GB.  it will be easier for you if you
>>> have the installer disk around.
>>>
>>> On Sun, Feb 6, 2011 at 6:08 PM, Mao Jianfeng <jianfeng.mao at gmail.com> wrote:
>>>> Hi Vincent and Martin,
>>>>
>>>> Sorry. I am not good at computer. And, I do not understand "Please
>>>> ensure that you have a current Xcode
>>>> tools image on your mac". I do not know how to do that.
>>>>
>>>> So, could you please show any lines of unix command to do that?
>>>>
>>>> And, I want to mention that the error I reported forward also occurred
>>>> in linux server as I showed you in my first email.
>>>>
>>>>
>>>>
>>>> I do not know if I have a current Xcode tools image on your mac. In
>>>> fact, I failed to install Ruuid package in my Mac OS X.
>>>>
>>>>
>>>>> biocLite("Ruuid", type="source")
>>>> Using R version 2.12.1, biocinstall version 2.7.4.
>>>> Installing Bioconductor version 2.7 packages:
>>>> [1] "Ruuid"
>>>> Please wait...
>>>>
>>>> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/src/contrib/Ruuid_1.28.0.tar.gz'
>>>> Content type 'application/x-gzip' length 71906 bytes (70 Kb)
>>>> opened URL
>>>> ==================================================
>>>> downloaded 70 Kb
>>>>
>>>> * installing *source* package ‘Ruuid’ ...
>>>> checking for pkg-config... no
>>>> checking for glib-config... no
>>>> configure: error: No glib package information found
>>>> ERROR: configuration failed for package ‘Ruuid’
>>>> * removing ‘/Library/Frameworks/R.framework/Versions/2.12/Resources/library/Ruuid’
>>>> * restoring previous
>>>> ‘/Library/Frameworks/R.framework/Versions/2.12/Resources/library/Ruuid’
>>>>
>>>> The downloaded packages are in
>>>>        ‘/private/var/folders/Ic/IcbLL0ELH9uqwZPaFP9Nz++++TQ/-Tmp-/RtmpReHOOb/downloaded_packages’
>>>> Updating HTML index of packages in '.Library'
>>>> Warning message:
>>>> In install.packages(pkgs = pkgs, repos = repos, ...) :
>>>>  installation of package 'Ruuid' had non-zero exit status
>>>>
>>>>
>>>>
>>>> 2011/2/6 Vincent Carey <stvjc at channing.harvard.edu>:
>>>>> I am sorry that you are running into this problem.  I encounter it
>>>>> with a small fraction of mac users when teaching courses.  If you have
>>>>> enough infrastructure to build the Ruuid package from source you will
>>>>> probably get around this.  Please ensure that you have a current Xcode
>>>>> tools image on your mac, and then try
>>>>>
>>>>> biocLite("Ruuid", type="source")
>>>>>
>>>>> report any error messages you encounter as you go through the same
>>>>> steps with GGBase and GGtools.  Thank you for your patience.
>>>>>
>>>>> On Sun, Feb 6, 2011 at 4:04 PM, Mao Jianfeng <jianfeng.mao at gmail.com> wrote:
>>>>>> Dear Martin,
>>>>>>
>>>>>> I followed your advice. But, the error is still there. Please help me.
>>>>>>
>>>>>> Jian-Feng,
>>>>>>
>>>>>>
>>>>>>> source("http://bioconductor.org/biocLite.R")
>>>>>> BioC_mirror = http://www.bioconductor.org
>>>>>> Change using chooseBioCmirror().
>>>>>>> biocLite('Ruuid')
>>>>>> Using R version 2.12.1, biocinstall version 2.7.4.
>>>>>> Installing Bioconductor version 2.7 packages:
>>>>>> [1] "Ruuid"
>>>>>> Please wait...
>>>>>>
>>>>>> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/bin/macosx/leopard/contrib/2.12/Ruuid_1.28.0.tgz'
>>>>>> Content type 'application/x-gzip' length 84154 bytes (82 Kb)
>>>>>> opened URL
>>>>>> ==================================================
>>>>>> downloaded 82 Kb
>>>>>>
>>>>>>
>>>>>> The downloaded packages are in
>>>>>>        /var/folders/Ic/IcbLL0ELH9uqwZPaFP9Nz++++TQ/-Tmp-//RtmpReHOOb/downloaded_packages
>>>>>>> biocLite("GGtools")
>>>>>> Using R version 2.12.1, biocinstall version 2.7.4.
>>>>>> Installing Bioconductor version 2.7 packages:
>>>>>> [1] "GGtools"
>>>>>> Please wait...
>>>>>>
>>>>>> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/bin/macosx/leopard/contrib/2.12/GGtools_3.8.4.tgz'
>>>>>> Content type 'application/x-gzip' length 63768931 bytes (60.8 Mb)
>>>>>> opened URL
>>>>>> =================================================
>>>>>> downloaded 60.8 Mb
>>>>>>
>>>>>>
>>>>>> The downloaded packages are in
>>>>>>        /var/folders/Ic/IcbLL0ELH9uqwZPaFP9Nz++++TQ/-Tmp-//RtmpReHOOb/downloaded_packages
>>>>>>> library(GGtools)
>>>>>> Loading required package: Biobase
>>>>>>
>>>>>> Welcome to Bioconductor
>>>>>>
>>>>>>  Vignettes contain introductory material. To view, type
>>>>>>  'openVignette()'. To cite Bioconductor, see
>>>>>>  'citation("Biobase")' and for packages 'citation(pkgname)'.
>>>>>>
>>>>>> Loading required package: GGBase
>>>>>> Loading required package: snpMatrix
>>>>>> Loading required package: survival
>>>>>> Loading required package: splines
>>>>>> Loading required package: RSQLite
>>>>>> Loading required package: DBI
>>>>>> Error in as.environment(pos) :
>>>>>>  no item called "newtable" on the search list
>>>>>> In addition: Warning message:
>>>>>> In objects(newtable, all.names = TRUE) :
>>>>>>  ‘newtable’ converted to character string
>>>>>> Error: package 'GGBase' could not be loaded
>>>>>>> sessionInfo()
>>>>>> R version 2.12.1 (2010-12-16)
>>>>>> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>>>>>>
>>>>>> locale:
>>>>>> [1] C/UTF-8/C/C/C/C
>>>>>>
>>>>>> attached base packages:
>>>>>> [1] splines   stats     graphics  grDevices utils     datasets  methods
>>>>>> [8] base
>>>>>>
>>>>>> other attached packages:
>>>>>> [1] RSQLite_0.9-4    DBI_0.2-5        snpMatrix_1.14.6 survival_2.36-2
>>>>>> [5] Biobase_2.10.0
>>>>>>
>>>>>> loaded via a namespace (and not attached):
>>>>>> [1] AnnotationDbi_1.12.0 GSEABase_1.12.2      XML_3.2-0
>>>>>> [4] annotate_1.28.0      graph_1.28.0         tools_2.12.1
>>>>>> [7] xtable_1.5-6
>>>>>>> version
>>>>>>               _
>>>>>> platform       x86_64-apple-darwin9.8.0
>>>>>> arch           x86_64
>>>>>> os             darwin9.8.0
>>>>>> system         x86_64, darwin9.8.0
>>>>>> status
>>>>>> major          2
>>>>>> minor          12.1
>>>>>> year           2010
>>>>>> month          12
>>>>>> day            16
>>>>>> svn rev        53855
>>>>>> language       R
>>>>>> version.string R version 2.12.1 (2010-12-16)
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> 2011/2/6 Martin Morgan <mtmorgan at fhcrc.org>:
>>>>>>> On 02/06/2011 04:35 AM, Mao Jianfeng wrote:
>>>>>>>> Dear listers,
>>>>>>>>
>>>>>>>> This the second time for me to post this same question in the list.
>>>>>>>>
>>>>>>>> I am now asking your helps on fix Error when GGtools loading in Mac
>>>>>>>> OSX and Linux server. I listed the command I used and the error I got,
>>>>>>>> and also the sessionInfo()s for each platform I used. It looks that
>>>>>>>> GGtools has been installed, the problem may come from package 'GGBase'
>>>>>>>> which can not be installed.
>>>>>>>>
>>>>>>>> Thanks in advance.
>>>>>>>>
>>>>>>>> #######################################################################
>>>>>>>> # (1) Mac OS X
>>>>>>>> # I have the most upgraded OS X, though it was showed "darwin9.8.0" in
>>>>>>>> the result of "version"
>>>>>>>> # command. I do not know why.
>>>>>>>>
>>>>>>>>> source("http://bioconductor.org/biocLite.R")
>>>>>>>> BioC_mirror = http://www.bioconductor.org
>>>>>>>> Change using chooseBioCmirror().
>>>>>>>>> biocLite("GGtools")
>>>>>>>> Using R version 2.12.1, biocinstall version 2.7.4.
>>>>>>>> Installing Bioconductor version 2.7 packages:
>>>>>>>> [1] "GGtools"
>>>>>>>> Please wait...
>>>>>>>>
>>>>>>>> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/bin/macosx/leopard/contrib/2.12/GGtools_3.8.4.tgz'
>>>>>>>> Content type 'application/x-gzip' length 63768931 bytes (60.8 Mb)
>>>>>>>> opened URL
>>>>>>>> =================================================
>>>>>>>> downloaded 60.8 Mb
>>>>>>>>
>>>>>>>>
>>>>>>>> The downloaded packages are in
>>>>>>>>       /var/folders/Ic/IcbLL0ELH9uqwZPaFP9Nz++++TQ/-Tmp-//RtmpyvXcQ8/downloaded_packages
>>>>>>>>> library(GGtools)
>>>>>>>> Loading required package: Biobase
>>>>>>>>
>>>>>>>> Welcome to Bioconductor
>>>>>>>>
>>>>>>>>   Vignettes contain introductory material. To view, type
>>>>>>>>   'openVignette()'. To cite Bioconductor, see
>>>>>>>>   'citation("Biobase")' and for packages 'citation(pkgname)'.
>>>>>>>>
>>>>>>>> Loading required package: GGBase
>>>>>>>> Loading required package: snpMatrix
>>>>>>>> Loading required package: survival
>>>>>>>> Loading required package: splines
>>>>>>>> Loading required package: RSQLite
>>>>>>>> Loading required package: DBI
>>>>>>>> Error in as.environment(pos) :
>>>>>>>>   no item called "newtable" on the search list
>>>>>>>
>>>>>>> THis is an obscure error. Try
>>>>>>>
>>>>>>>   biocLite('Ruuid')
>>>>>>>
>>>>>>> first, and then biocLite("GGtools")
>>>>>>>
>>>>>>> Martin
>>>>>>>
>>>>>>>> In addition: Warning message:
>>>>>>>> In objects(newtable, all.names = TRUE) :
>>>>>>>>   ‘newtable’ converted to character string
>>>>>>>> Error: package 'GGBase' could not be loaded
>>>>>>>>
>>>>>>>>> sessionInfo()
>>>>>>>> R version 2.12.1 (2010-12-16)
>>>>>>>> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>>>>>>>>
>>>>>>>> locale:
>>>>>>>> [1] C/UTF-8/C/C/C/C
>>>>>>>>
>>>>>>>> attached base packages:
>>>>>>>> [1] splines   stats     graphics  grDevices utils     datasets  methods
>>>>>>>> [8] base
>>>>>>>>
>>>>>>>> other attached packages:
>>>>>>>>  [1] biomaRt_2.6.0       BSgenome_1.18.3     Biostrings_2.18.2
>>>>>>>>  [4] GenomicRanges_1.2.3 IRanges_1.8.8       RSQLite_0.9-4
>>>>>>>>  [7] DBI_0.2-5           snpMatrix_1.14.6    survival_2.36-2
>>>>>>>> [10] Biobase_2.10.0
>>>>>>>>
>>>>>>>> loaded via a namespace (and not attached):
>>>>>>>> [1] AnnotationDbi_1.12.0 GSEABase_1.12.2      RCurl_1.4-3
>>>>>>>> [4] XML_3.2-0            annotate_1.28.0      graph_1.28.0
>>>>>>>> [7] tools_2.12.1         xtable_1.5-6
>>>>>>>>> version
>>>>>>>>                _
>>>>>>>> platform       x86_64-apple-darwin9.8.0
>>>>>>>> arch           x86_64
>>>>>>>> os             darwin9.8.0
>>>>>>>> system         x86_64, darwin9.8.0
>>>>>>>> status
>>>>>>>> major          2
>>>>>>>> minor          12.1
>>>>>>>> year           2010
>>>>>>>> month          12
>>>>>>>> day            16
>>>>>>>> svn rev        53855
>>>>>>>> language       R
>>>>>>>> version.string R version 2.12.1 (2010-12-16)
>>>>>>>>
>>>>>>>> #######################################################################
>>>>>>>> # (1) Linux server
>>>>>>>>
>>>>>>>>> source("http://bioconductor.org/biocLite.R")
>>>>>>>> BioC_mirror = http://www.bioconductor.org
>>>>>>>> Change using chooseBioCmirror().
>>>>>>>>> library(GGtools)
>>>>>>>> Error in library(GGtools) : there is no package called 'GGtools'
>>>>>>>>> biocLite("GGtools")
>>>>>>>> Using R version 2.12.0, biocinstall version 2.7.4.
>>>>>>>> Installing Bioconductor version 2.7 packages:
>>>>>>>> [1] "GGtools"
>>>>>>>> Please wait...
>>>>>>>>
>>>>>>>> Installing package(s) into ‘/ebio/abt6/jmao/rpacks’
>>>>>>>> (as ‘lib’ is unspecified)
>>>>>>>> also installing the dependencies ‘RCurl’, ‘XML’, ‘GGBase’,
>>>>>>>> ‘rtracklayer’, ‘GSEABase’
>>>>>>>>
>>>>>>>> trying URL 'http://cran.fhcrc.org/src/contrib/RCurl_1.5-0.tar.gz'
>>>>>>>> Content type 'application/x-gzip' length 744626 bytes (727 Kb)
>>>>>>>> opened URL
>>>>>>>> ==================================================
>>>>>>>> downloaded 727 Kb
>>>>>>>>
>>>>>>>> trying URL 'http://cran.fhcrc.org/src/contrib/XML_3.2-0.tar.gz'
>>>>>>>> Content type 'application/x-gzip' length 779406 bytes (761 Kb)
>>>>>>>> opened URL
>>>>>>>> ==================================================
>>>>>>>> downloaded 761 Kb
>>>>>>>>
>>>>>>>> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/src/contrib/GGBase_3.10.0.tar.gz'
>>>>>>>> Content type 'application/x-gzip' length 50398547 bytes (48.1 Mb)
>>>>>>>> opened URL
>>>>>>>> =================================================
>>>>>>>> downloaded 48.1 Mb
>>>>>>>>
>>>>>>>> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/src/contrib/rtracklayer_1.10.6.tar.gz'
>>>>>>>> Content type 'application/x-gzip' length 1611074 bytes (1.5 Mb)
>>>>>>>> opened URL
>>>>>>>> ==================================================
>>>>>>>> downloaded 1.5 Mb
>>>>>>>>
>>>>>>>> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/src/contrib/GSEABase_1.12.2.tar.gz'
>>>>>>>> Content type 'application/x-gzip' length 170133 bytes (166 Kb)
>>>>>>>> opened URL
>>>>>>>> ==================================================
>>>>>>>> downloaded 166 Kb
>>>>>>>>
>>>>>>>> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/src/contrib/GGtools_3.8.4.tar.gz'
>>>>>>>> Content type 'application/x-gzip' length 63730571 bytes (60.8 Mb)
>>>>>>>> opened URL
>>>>>>>> =================================================
>>>>>>>> downloaded 60.8 Mb
>>>>>>>>
>>>>>>>> * installing *source* package ‘RCurl’ ...
>>>>>>>> checking for curl-config... no
>>>>>>>> Cannot find curl-config
>>>>>>>> ERROR: configuration failed for package ‘RCurl’
>>>>>>>> * removing ‘/ebio/abt6/jmao/rpacks/RCurl’
>>>>>>>> * installing *source* package ‘XML’ ...
>>>>>>>> checking for gcc... gcc
>>>>>>>> checking for C compiler default output file name... a.out
>>>>>>>> checking whether the C compiler works... yes
>>>>>>>> checking whether we are cross compiling... no
>>>>>>>> checking for suffix of executables...
>>>>>>>> checking for suffix of object files... o
>>>>>>>> checking whether we are using the GNU C compiler... yes
>>>>>>>> checking whether gcc accepts -g... yes
>>>>>>>> checking for gcc option to accept ISO C89... none needed
>>>>>>>> checking how to run the C preprocessor... gcc -E
>>>>>>>> checking for sed... /bin/sed
>>>>>>>> checking for pkg-config... /usr/bin/pkg-config
>>>>>>>> checking for xml2-config... no
>>>>>>>> Cannot find xml2-config
>>>>>>>> ERROR: configuration failed for package ‘XML’
>>>>>>>> * removing ‘/ebio/abt6/jmao/rpacks/XML’
>>>>>>>> ERROR: dependencies ‘RCurl’, ‘XML’ are not available for package ‘rtracklayer’
>>>>>>>> * removing ‘/ebio/abt6/jmao/rpacks/rtracklayer’
>>>>>>>> ERROR: dependency ‘XML’ is not available for package ‘GSEABase’
>>>>>>>> * removing ‘/ebio/abt6/jmao/rpacks/GSEABase’
>>>>>>>> ERROR: dependency ‘GSEABase’ is not available for package ‘GGBase’
>>>>>>>> * removing ‘/ebio/abt6/jmao/rpacks/GGBase’
>>>>>>>> ERROR: dependencies ‘GGBase’, ‘rtracklayer’, ‘GSEABase’ are not
>>>>>>>> available for package ‘GGtools’
>>>>>>>> * removing ‘/ebio/abt6/jmao/rpacks/GGtools’
>>>>>>>>
>>>>>>>> The downloaded packages are in
>>>>>>>>       ‘/tmp/RtmpMtMIp6/downloaded_packages’
>>>>>>>> Warning messages:
>>>>>>>> 1: In install.packages(pkgs = pkgs, repos = repos, ...) :
>>>>>>>>   installation of package 'RCurl' had non-zero exit status
>>>>>>>> 2: In install.packages(pkgs = pkgs, repos = repos, ...) :
>>>>>>>>   installation of package 'XML' had non-zero exit status
>>>>>>>> 3: In install.packages(pkgs = pkgs, repos = repos, ...) :
>>>>>>>>   installation of package 'rtracklayer' had non-zero exit status
>>>>>>>> 4: In install.packages(pkgs = pkgs, repos = repos, ...) :
>>>>>>>>   installation of package 'GSEABase' had non-zero exit status
>>>>>>>> 5: In install.packages(pkgs = pkgs, repos = repos, ...) :
>>>>>>>>   installation of package 'GGBase' had non-zero exit status
>>>>>>>> 6: In install.packages(pkgs = pkgs, repos = repos, ...) :
>>>>>>>>   installation of package 'GGtools' had non-zero exit status
>>>>>>>>
>>>>>>>>> sessionInfo()
>>>>>>>> R version 2.12.0 (2010-10-15)
>>>>>>>> Platform: x86_64-unknown-linux-gnu (64-bit)
>>>>>>>>
>>>>>>>> locale:
>>>>>>>>  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>>>>>>>>  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>>>>>>>>  [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8
>>>>>>>>  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
>>>>>>>>  [9] LC_ADDRESS=C               LC_TELEPHONE=C
>>>>>>>> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>>>>>>>>
>>>>>>>> attached base packages:
>>>>>>>> [1] stats     graphics  grDevices utils     datasets  methods   base
>>>>>>>>
>>>>>>>> loaded via a namespace (and not attached):
>>>>>>>> [1] tools_2.12.0
>>>>>>>>> version
>>>>>>>>                _
>>>>>>>> platform       x86_64-unknown-linux-gnu
>>>>>>>> arch           x86_64
>>>>>>>> os             linux-gnu
>>>>>>>> system         x86_64, linux-gnu
>>>>>>>> status
>>>>>>>> major          2
>>>>>>>> minor          12.0
>>>>>>>> year           2010
>>>>>>>> month          10
>>>>>>>> day            15
>>>>>>>> svn rev        53317
>>>>>>>> language       R
>>>>>>>> version.string R version 2.12.0 (2010-10-15)
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> Computational Biology
>>>>>>> Fred Hutchinson Cancer Research Center
>>>>>>> 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109
>>>>>>>
>>>>>>> Location: M1-B861
>>>>>>> Telephone: 206 667-2793
>>>>>>>
>>>>>>
>>>>>>
>>>>>>

>>>>



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