[BioC] mapping coverage

[Martin Morgan]

On 02/16/2011 03:08 PM, Adrian Johnson wrote:
> hi :
> 
> has any one tried to graphically represent coverage data from capture
> sequencing on a chromosome. would you please share what packages you
> used to represent coverage graphically.

My own approach has been to write wrappers around lattice plotting
functions, down-sampling using successiveIRanges for instance to capture
the main features when getting a whole-genome view.

In some respects it seems like the most insightful visualizations will
not be of coverage per se but of derived statistics.

Martin

> 
> thanks
> Adrian.
> 
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