[BioC] Mapping genomic coordinates to transcript coordinates? (revived)

[Chris Fields]

+1 (from the bioperl end).  Would be nice to have a straightforward BioC-based way of doing this.  Aaron's suggestion of a similar (maybe simpler?) API to Bio::Coordinate::GeneMapper is good (though as pointed out in the thread it is a bit complex).

chris

On Feb 25, 2011, at 9:25 AM, Cook, Malcolm wrote:

> Hiya,
> 
> I am reviving this thread
> 
>        https://stat.ethz.ch/pipermail/bioconductor/2010-November/036661.html
> 
> and am poised to follow the lead proposed by Marc Carlson
> 
> but before I do..... has anyone beaten me to it?
> 
> And/or does anyone have a suggestion as to how to best contribute such an effort back ....
> 
> ... as an addition to GenomicFeatures perhaps
> 
> Best,
> 
> Malcolm Cook
> Stowers Institute for Medical Research -  Bioinformatics
> Kansas City, Missouri  USA
> 
> 
> 
> 
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> 
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