[BioC] cox PH model - KM curve

Adrian Johnson oriolebaltimore at gmail.com
Thu Jul 7 00:17:38 CEST 2011

Dear group:
I have gene expression data matrix (after RMA) as a matrix. In another
table (as data frame) I have survival data. I have 25 genes for which
I want to plot a Kaplan-meier curves based on cox model for these 25
genes. Is there a workflow to do this analysis.
I tried phenoTest, however I do not know how to make use of
heatmapPhenoTest function on a given gene.

I appreciate your help. Thanks

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