[BioC] DNAcopy dev version installation problem

Zhu, Lihua (Julie) Julie.Zhu at umassmed.edu
Wed Jun 1 21:26:46 CEST 2011


Dear Venkatraman,

I encountered the following problems when tried to install the DNAcopy
package 1.27.0 at 
http://bioconductor.org/packages/2.9/bioc/html/DNAcopy.html.

Although R CMD install went ok for MacOS 10.5 (Leopard) binary,
library(DNAcopy) produced the following error.

library(DNAcopy)
Error in dyn.load(file, DLLpath = DLLpath, ...) :
  unable to load shared object
'/Library/Frameworks/R.framework/Versions/2.14/Resources/library/DNAcopy/lib
s/i386/DNAcopy.so':
  
dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/DNAco
py/libs/i386/DNAcopy.so, 6): Library not loaded:
/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libR.dylib
  Referenced from: 
/Library/Frameworks/R.framework/Versions/2.14/Resources/library/DNAcopy/libs
/i386/DNAcopy.so
  Reason: image not found
In addition: Warning message:
In install.packages(c("DNAcopy"), lib =
"/Library/Frameworks/R.framework/Resources/library/",  :
  installation of package ŒDNAcopy¹ had non-zero exit status
Error: package/namespace load failed for ŒDNAcopy¹

Here is the error message if I tried to install from the package source.

 R CMD install DNAcopy_1.27.0.tar
* installing to library
Œ/Library/Frameworks/R.framework/Versions/2.14/Resources/library¹
* installing *source* package ŒDNAcopy¹ ...
** libs
*** arch - i386
gfortran-4.2 -arch i386   -fPIC  -g -O2 -c cbsWtstats.f -o cbsWtstats.o
make: gfortran-4.2: Command not found
make: *** [cbsWtstats.o] Error 127
ERROR: compilation failed for package ŒDNAcopy¹
* removing 
Œ/Library/Frameworks/R.framework/Versions/2.14/Resources/library/DNAcopy¹
* restoring previous
Œ/Library/Frameworks/R.framework/Versions/2.14/Resources/library/DNAcopy¹

Could you please help? Thanks!

Best regards,

Julie



More information about the Bioconductor mailing list