[BioC] Error from aafGO using yeast2.db

James W. MacDonald jmacdon at med.umich.edu
Thu Jun 2 21:42:04 CEST 2011

Hi Colin,

There appears to be a problem with the construction of the sql query for 
aafGO when using the yeast2.db package:

 > suppressMessages(library(annaffy))
 > suppressMessages(library(yeast2.db))
 > ids <- head(Lkeys(yeast2CHR))
 > aafGO(ids, "yeast2.db")
Error in sqliteExecStatement(con, statement, bind.data) :
   RS-DBI driver: (error in statement: cannot join using column gene_id 
- column not present in both tables)



James W. MacDonald, M.S.
Douglas Lab
University of Michigan
Department of Human Genetics
5912 Buhl
1241 E. Catherine St.
Ann Arbor MI 48109-5618
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