[BioC] edgeR users update to v2.2.5

Davis McCarthy dmccarthy at wehi.EDU.AU
Fri Jun 3 02:20:39 CEST 2011

Dear edgeR users

If you are using the release version of edgeR, please ensure you have updated to the latest release version, edgeR 2.2.5. We caught a bug in exactTest() introduced in v2.2.0 that affects p-values when some rows of the count matrix are all zeros.

A recent off-list question prompted me to remind everyone of this bug-fix on the list. 

Ideally all Bioconductor users are updating their packages very regularly, but if you haven't updated your version of edgeR lately I recommend you do it now.

Best wishes

Davis J McCarthy
Research Technician
Bioinformatics Division
Walter and Eliza Hall Institute of Medical Research
1G Royal Parade, Parkville, Vic 3052, Australia
dmccarthy at wehi.edu.au

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