[BioC] arrayQuality - maQualityPlots - Error: duplicate switch defaults: 'list(dev =...' and ''
fabio.liberante at gmail.com
Tue Jun 7 16:12:22 CEST 2011
I've been trying to generate qualitative QC plots on a two-color set
of arrays using arrayQuality.
When I first generated the error I tried using the swirl dataset to
see if it was a problem with my data. The error still came up. It
seems that the dev switch is being set twice. I also tried setting
dev='png'/'pdf' etc., but still the same error. I looked through the
source of arrayQuality and I can't find any unclosed quotes that may
generate this error, but I could be wrong.
 "fish.gal" "SpotTypes.txt" "swirl.1.spot"
"swirl.2.spot" "swirl.3.spot" "swirl.4.spot"
Error: duplicate switch defaults: 'list(dev =...' and ''
R version 2.13.0 (2011-04-13)
Platform: i386-pc-mingw32/i386 (32-bit)
 LC_COLLATE=English_United Kingdom.1252 LC_CTYPE=English_United
Kingdom.1252 LC_MONETARY=English_United Kingdom.1252 LC_NUMERIC=C
 LC_TIME=English_United Kingdom.1252
attached base packages:
 stats graphics grDevices utils datasets methods base
other attached packages:
 arrayQuality_1.30.0 convert_1.28.0 marray_1.30.0
loaded via a namespace (and not attached):
 grid_2.13.0 gridBase_0.4-3 hexbin_1.26.0
lattice_0.19-23 RColorBrewer_1.0-2 tools_2.13.0
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