[BioC] BSgenome package - danRer7 genome assembly

Hervé Pagès hpages at fhcrc.org
Wed Jun 8 21:14:56 CEST 2011

Hi Brett,

On 11-06-08 09:31 AM, Brett Maricque wrote:
> Dear Herve,
> Can the danRer7 genome assembly be added to the BSgenome package for
> Bioconductor?

The danRer7 genome is already in Bioconductor. Try this (from
R-2.13 or R-2.14):


and you should see it. Then install it with biocLite() (it might
take a while, it's 400+ MB).

Please let us know if you run into problems.


> Thank you in advance,
> Brett Maricque
> Brett Maricque
> Washington University in St. Louis
> PhD Candidate, Lab of Dr. Ting Wang
> Program in Computational and Systems Biology

Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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