[BioC] gene SOX6 in HT HG-U133A

[James F. Reid]

Hi Andreas,

you should check which annotations they used at the time of study (or 
guess it, as it usually is the case).
It could very well be that a probeset used to map to SOX6 and now does not.

Best,
J.

On 05/03/2011 04:38 PM, Andreas Heider wrote:
> Hi bioconductor mailing list,
> I am confused about a publication that utilizes Affymetrix microarrays of
> type "HT HG-U133A". In this study they present data about SOX6, but as far
> as I could find information, there is no probe/probeset in HT HG-U133A that
> detects this. So how did they do this? Is there some non-affy annotation
> that holds this information? Are there custom CDFs that include SOX6? If so,
> I could use this in my own analysis.
>
> The study I'm referring to is "Reference Maps of Human ES and iPS Cell
> Variation Enable High-Throughput Characterization of Pluripotent Cell
> Lines".
>
> Thanks in advance, Andreas
>
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