[BioC] getSequence ensmebl biomaRt

Shi, Tao shidaxia at yahoo.com
Thu May 5 22:11:12 CEST 2011


Hi all,

This is a follow-up for this post:

https://stat.ethz.ch/pipermail/bioconductor/2009-August/029164.html

as I have encountered the same problem.  Jim's solution was good, but I'm 
curious why biomaRt can't do this anymore.  I clearly remember I was using 
biomaRt to do this (couldn't find my old code ...).  Plus in the getSequence 
help, for seqType, it says "genomic".

Thanks!

...Tao



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