[BioC] Rsamtools installation
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Tue Nov 8 15:54:54 CET 2011
On Tue, Nov 8, 2011 at 9:33 AM, John Coulthard <bahhab at hotmail.com> wrote:
> I'm trying to install Rsamtools and getting errors! I've tried...
> (see below)
> Why doesn't biocLite() install the current version?
It's trying to :-)
> I'm almost sure the dependencies are all up-to-date using install.packages().
Correct me if I'm wrong, but `install.packages` doesn't update the
bioconductor packages, does it?
> So if it's not an out of date dependent what could the problem be?
> If is it an out of date dependent how do I get R to tell me which one?
Let's start with IRanges .. what version of that do you have installed?
You can also just:
R> biocLite() ## maybe set ask=FALSE
to update your already installed packages (did you happen to move your
old R-2.13 library to R-2.14?) ...
Graduate Student: Computational Systems Biology
| Memorial Sloan-Kettering Cancer Center
| Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact
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