[BioC] try to install bioc v2.9 but always get v2.8 in centos 5.1
shenr at ohsu.edu
Sun Nov 13 23:30:37 CET 2011
Thanks so much, Martin. I followed your instruction and it did give v2.9
for biocinstallRepos() using R --vanilla. But using R without --vanilla,
the problem came back.
Then I found that the .RData is restored everytime when I launch R. So I
deleted .RData and everything goes well.
I really appreciate your help!
On 2011-11-13 Sun 1:12 PM, Martin Morgan wrote:
> On 11/13/2011 11:50 AM, Rongkun Shen [guest] wrote:
>> Hi, I installed R 2.14.0 and tried to install bioc 2.9 in centos 5.1
>> 64bit. It turned out that it always got bioc b2.8 installed. I wonder
>> if there is anyway to force install bioc 2.9. Thanks!
> Probably a little more information needed; it sounds like an alternative
> repository is being used, perhaps set on your system in a .Rprofile? Try
> R --vanilla
> and then
> I get
> > biocinstallRepos()
> You? If the version '2.9' is different, and you are not setting
> repositories yourself, what does the following produce?
> > tools:::.BioC_version_associated_with_R_version
>  ‘2.9’
>> By the way, there is no problem to install bioc 2.9 in Ubuntu
>> Best, Rongkun Shen
>> -- output of sessionInfo():
>> R version 2.14.0 (2011-10-31) Platform: x86_64-unknown-linux-gnu
>> locale:  LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C 
>> LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 
>> LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8  LC_PAPER=C
>> LC_NAME=C  LC_ADDRESS=C LC_TELEPHONE=C 
>> LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>> attached base packages:  stats graphics grDevices utils
>> datasets methods base
>> other attached packages:  BiocInstaller_1.2.1
>> loaded via a namespace (and not attached):  tools_2.14.0
>> -- Sent via the guest posting facility at bioconductor.org.
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