[BioC] GSVA error when trying to bootstrap

Justin Guinney justin.guinney at sagebase.org
Tue Nov 22 01:02:19 CET 2011


I'm not familiar with this error, but will look into this.

As for computing a pvalue for each sample/geneset, bootstrapping is
the method we offer.  With bootstrapping turned on, it will return a
list of size K where each k is the bootstrapped enrichment matrix.
You can then use this to compute your statistic.

I'll provide more detail once I track down this error.


Justin Guinney, Ph.D.
Research Scientist
Sage Bionetworks
Fred Hutchinson Cancer Research Center
1100 Fairview Ave North
Seattle, WA 98109
206 667-2146 (b)
919 357-4762 (c)

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