[BioC] problem with GO terms

Ina Hoeschele inah at vbi.vt.edu
Tue Nov 22 19:03:03 CET 2011

thank you, Jim ...
I did what you show below and I get the same result:

 > get("GO:0050864", org.Hs.egGO2EG)
Error in .checkKeys(value, Rkeys(x), x at ifnotfound) :
   value for "GO:0050864" not found

but why is GOstats giving me this GO term?

Thanks again, Ina

> sessionInfo()
R version 2.14.0 (2011-10-31)
Platform: i386-pc-mingw32/i386 (32-bit)

[1] LC_COLLATE=English_United States.1252 
[2] LC_CTYPE=English_United States.1252   
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C                          
[5] LC_TIME=English_United States.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] biomaRt_2.10.0            GOstats_2.20.0           
 [3] graph_1.32.0              Category_2.20.0          
 [5] PFAM.db_2.6.1             KEGG.db_2.6.1            
 [7] GO.db_2.6.1               annotate_1.32.0          
 [9] illuminaHumanv4.db_1.12.1 org.Hs.eg.db_2.6.4       
[11] RSQLite_0.10.0            DBI_0.2-5                
[13] AnnotationDbi_1.16.4      Biobase_2.14.0           
[15] BiocInstaller_1.2.1      

loaded via a namespace (and not attached):
 [1] genefilter_1.36.0 GSEABase_1.16.0   IRanges_1.12.2    RBGL_1.30.1      
 [5] RCurl_1.7-0.1     splines_2.14.0    survival_2.36-10  tools_2.14.0     
 [9] XML_3.4-2.2       xtable_1.6-0     

More information about the Bioconductor mailing list