[BioC] Bioconductor does not install properly

Bas Jansen bjhjansen at gmail.com
Thu Nov 24 11:47:49 CET 2011

Dear fellow Bioconductor users:

This is the message I get when I try to install Bioconductor as
instructed on the website:

"Warning message:
In getDependencies(pkgs, dependencies, available, lib) :
  packages ‘affy’, ‘affydata’, ‘affyPLM’, ‘affyQCReport’, ‘annaffy’,
‘annotate’, ‘Biobase’, ‘biomaRt’, ‘Biostrings’, ‘DynDoc’, ‘gcrma’,
‘genefilter’, ‘geneplotter’, ‘GenomicRanges’, ‘hgu95av2.db’, ‘limma’,
‘marray’, ‘multtest’, ‘vsn’ are not available (for R version 2.14.0)"

Am I overlooking something?

Thanks for any help, and kind regards,

> sessionInfo()
R version 2.14.0 (2011-10-31)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

[1] C/UTF-8/C/C/C/C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] BiocInstaller_1.2.1

loaded via a namespace (and not attached):
[1] tools_2.14.0

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