[BioC] custom SNPlocs / BSgenome package

Valerie Obenchain vobencha at fhcrc.org
Mon Nov 28 03:30:54 CET 2011

Hi kmo,

For the BSgenome, you can follow the "How to forge a BSgenome data 
package" document,


I'm not sure what you mean by "a SNPlocs package for it". The SNPlocs 
packages are all Homo sapiens and created from each dbSNP build. They 
can be found here,


Are you asking about creating a snp annotation package for a different 


On 11/26/11 11:03, km wrote:
> Hi all,
> How do I make a custom BSGenome package for a given genome and SNPlocs
> package for it ?
> I appreciate any pointers.
> Thanks,
> Regards,
> kmo
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