[BioC] the same problem happened

[Sean Davis]

On Thu, Oct 6, 2011 at 9:45 AM, wang peter <wng.peter at gmail.com> wrote:
> dear all:
>         i am shan gao from cornell university. i reported
> a bug, and Hervé Pagès said it will be fixed
>
>  in solveUserSEW(width(x), start = start, end = end, width = width) :
>  solving row 686: 'allow.nonnarrowing' is FALSE and the supplied start (0)
> is < 1
> This bug should be fixed in Biostrings release (2.20.4) and devel
> (2.21.10).
>
> but now when i run the function
>  clippedReads <- narrow(trimmedReads, start=start(clippedCoords),
> end=end(clippedCoords))
>
> the same error reported
>
>
> Error in solveUserSEW(width(x), start = start, end = end, width = width) :
>  solving row 1: 'allow.nonnarrowing' is FALSE and the supplied start (2) is
>> refwidth + 1
> i already updated the bioconductor, can you tell me how to fix it
> thx

For ALL bug reports and most other emails, it is necessary to include
the output of sessionInfo().  Without that valuable information, no
one can begin to help you.

Sean