[BioC] Coverage by base

Steve Lianoglou mailinglist.honeypot at gmail.com
Mon Oct 10 17:28:43 CEST 2011


So, just to be clear

You want, say, this row:

>     start   end width
>  [1]  1128  1205    78 [2 3 4 4 4 5 7 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 ...]

To be something like:

start   end   sum
1128  1205  (2 + 3 + 4 + 4 + ...) = sum(this vector here)?

type of thing? and maybe tack on a "gene-id" column so you know which
row belongs to which gene?

-- 
Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact



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