[BioC] Agi4x44PreProcess package: Error in build.est

[Francois Pepin]

Hi Jon,

Have you tried Jeryk's suggestion in making sure that the name match? Right now they're not matching properly.

Francois

On Oct 9, 2011, at 7:13 , Jon Mohl wrote:

> Francois,
> 
> Here is the results...
> 
>> dim(targets)
> [1] 3 4
>> dim(tdPROC)
> [1] 41093     3
> 
> And here are the filenames and the start of my tdPROC$G for comparison as well.
> 
>> targets
>  Slide.Number
> 1            1
> 2            2
> 3            3
> 
> 
>  FileName
> 1 /Microarray_raw_data_Protein_Genomic/Agilent_Genomic/Tissue_Agilent_Genomic/US23502379_251485040308_S01_GE1-v5_91_0806_1_1_006_DS_EP
> 2 /Microarray_raw_data_Protein_Genomic/Agilent_Genomic/Tissue_Agilent_Genomic/US23502379_251485040308_S01_GE1-v5_91_0806_1_2_008_BR_LP
> 3 /Microarray_raw_data_Protein_Genomic/Agilent_Genomic/Tissue_Agilent_Genomic/US23502379_251485040308_S01_GE1-v5_91_0806_1_3_005_EC_NP
>  Treatment GErep
> 1        EP     1
> 2        LP     2
> 3        NP     3
>> colnames(tdPROC$G)
> [1] "/Microarray_raw_data_Protein_Genomic/Agilent_Genomic/Tissue_Agilent_Genomic/US23502379_251485040308_S01_GE1-v5_91_0806_1_1_006_DS_EP"
> [2] "/Microarray_raw_data_Protein_Genomic/Agilent_Genomic/Tissue_Agilent_Genomic/US23502379_251485040308_S01_GE1-v5_91_0806_1_2_008_BR_LP"
> [3] "/Microarray_raw_data_Protein_Genomic/Agilent_Genomic/Tissue_Agilent_Genomic/US23502379_251485040308_S01_GE1-v5_91_0806_1_3_005_EC_NP"
> 
> Thanks for trying to help,
> 
> Jon Mohl
>