[BioC] SNP 6 chip

[James W. MacDonald]

Hi John,

On 10/19/2011 2:27 PM, John linux-user wrote:
> Hello,
>
> Can you please suggest R packages for analyzing affy SNP 6 and 250K as well as copy number variations for sequencing data? Thanks.

The oligo package will do this (although I don't know if it can do the 
CNV part). You might also look at xps.

Best,

Jim


>
> John
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-- 
James W. MacDonald, M.S.
Biostatistician
Douglas Lab
University of Michigan
Department of Human Genetics
5912 Buhl
1241 E. Catherine St.
Ann Arbor MI 48109-5618
734-615-7826

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