[BioC] PICS

[Arnaud Droit]

Hi Julie,

It seems a problems with GSL.
Have you GSL installed on your environment ?

Thanks,

Arnaud.

Le 2011-10-21 à 09:39, Zhu, Lihua (Julie) a écrit :

> Dear PICS developers,
> 
> I encountered problem loading PICS Version: 1.7.0. Could you please let me
> know how to fix this?
> 
> Many thanks!
> 
> Best regards,
> 
> Julie
> 
> library(PICS)
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
> unable to load shared object
> '/Library/Frameworks/R.framework/Versions/2.14/Resources/library/PICS/libs/x
> 86_64/PICS.so':
> 
> dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/PICS/
> libs/x86_64/PICS.so, 6): Symbol not found: _gsl_blas_dgemv
> Referenced from: 
> /Library/Frameworks/R.framework/Versions/2.14/Resources/library/PICS/libs/x8
> 6_64/PICS.so
> Expected in: dynamic lookup
> 
> Error: package/namespace load failed for ŒPICS¹
> 
> sessionInfo()
> R version 2.14.0 beta (2011-10-17 r57293)
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
> 
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
> 
> attached base packages:
> [1] grid      stats     graphics  grDevices utils     datasets  methods
> base     
> 
> other attached packages:
> [1] ChIPpeakAnno_2.0.5                  gplots_2.10.1
> [3] KernSmooth_2.23-6                   caTools_1.12
> [5] bitops_1.0-4.1                      gdata_2.8.2
> [7] gtools_2.6.2                        limma_3.9.22
> [9] org.Hs.eg.db_2.6.3                  GO.db_2.6.1
> [11] RSQLite_0.10.0                      DBI_0.2-5
> [13] AnnotationDbi_1.15.38               BSgenome.Ecoli.NCBI.20080805_1.3.17
> [15] multtest_2.9.1                      Biobase_2.13.11
> [17] biomaRt_2.9.3                       BiocInstaller_1.1.28
> [19] ShortRead_1.11.44                   latticeExtra_0.6-18
> [21] RColorBrewer_1.0-5                  Rsamtools_1.5.76
> [23] lattice_0.19-33                     BSgenome_1.21.7
> [25] Biostrings_2.21.11                  GenomicRanges_1.5.51
> [27] IRanges_1.11.31
> 
> loaded via a namespace (and not attached):
> [1] hwriter_1.3         MASS_7.3-16         RCurl_1.6-10
> rtracklayer_1.13.19 splines_2.14.0
> [6] survival_2.36-10    tools_2.14.0        XML_3.4-3
> zlibbioc_0.1.8 
> 
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