[BioC] PICS

[Arnaud BioC]

Hi Julie,

It should works also on R-64 environment.
Could you send me the error message and R session ?
I am using the same config (Apple 64 bit) as you. 

Arnaud.


Le 2011-10-21 à 13:27, Zhu, Lihua (Julie) a écrit :

> Arnaud,
> 
> Many thanks for your quick response and suggestions. After GSL and snowfall
> installation, PICS can be loaded in R 32-bit environment. However it cannot
> be loaded to R 64-bit environment ( x86_64-apple-darwin9.8.0/x86_64). Is
> this expected? Thanks!
> 
> Best regards,
> 
> Julie
> 
> 
> On 10/21/11 9:43 AM, "Arnaud Droit" <arnaud.droit at crchuq.ulaval.ca> wrote:
> 
>> Hi Julie,
>> 
>> It seems a problems with GSL.
>> Have you GSL installed on your environment ?
>> 
>> Thanks,
>> 
>> Arnaud.
>> 
>> Le 2011-10-21 à 09:39, Zhu, Lihua (Julie) a écrit :
>> 
>>> Dear PICS developers,
>>> 
>>> I encountered problem loading PICS Version: 1.7.0. Could you please let me
>>> know how to fix this?
>>> 
>>> Many thanks!
>>> 
>>> Best regards,
>>> 
>>> Julie
>>> 
>>> library(PICS)
>>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>>> unable to load shared object
>>> '/Library/Frameworks/R.framework/Versions/2.14/Resources/library/PICS/libs/x
>>> 86_64/PICS.so':
>>> 
>>> dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/PICS/
>>> libs/x86_64/PICS.so, 6): Symbol not found: _gsl_blas_dgemv
>>> Referenced from:
>>> /Library/Frameworks/R.framework/Versions/2.14/Resources/library/PICS/libs/x8
>>> 6_64/PICS.so
>>> Expected in: dynamic lookup
>>> 
>>> Error: package/namespace load failed for ŒPICS¹
>>> 
>>> sessionInfo()
>>> R version 2.14.0 beta (2011-10-17 r57293)
>>> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>>> 
>>> locale:
>>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>>> 
>>> attached base packages:
>>> [1] grid      stats     graphics  grDevices utils     datasets  methods
>>> base     
>>> 
>>> other attached packages:
>>> [1] ChIPpeakAnno_2.0.5                  gplots_2.10.1
>>> [3] KernSmooth_2.23-6                   caTools_1.12
>>> [5] bitops_1.0-4.1                      gdata_2.8.2
>>> [7] gtools_2.6.2                        limma_3.9.22
>>> [9] org.Hs.eg.db_2.6.3                  GO.db_2.6.1
>>> [11] RSQLite_0.10.0                      DBI_0.2-5
>>> [13] AnnotationDbi_1.15.38               BSgenome.Ecoli.NCBI.20080805_1.3.17
>>> [15] multtest_2.9.1                      Biobase_2.13.11
>>> [17] biomaRt_2.9.3                       BiocInstaller_1.1.28
>>> [19] ShortRead_1.11.44                   latticeExtra_0.6-18
>>> [21] RColorBrewer_1.0-5                  Rsamtools_1.5.76
>>> [23] lattice_0.19-33                     BSgenome_1.21.7
>>> [25] Biostrings_2.21.11                  GenomicRanges_1.5.51
>>> [27] IRanges_1.11.31
>>> 
>>> loaded via a namespace (and not attached):
>>> [1] hwriter_1.3         MASS_7.3-16         RCurl_1.6-10
>>> rtracklayer_1.13.19 splines_2.14.0
>>> [6] survival_2.36-10    tools_2.14.0        XML_3.4-3
>>> zlibbioc_0.1.8 
>>> 
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>> 
>> 
>