[BioC] accessing GenBank features

Gerhard Thallinger Gerhard.Thallinger at tugraz.at
Thu Sep 22 09:45:01 CEST 2011


Hi Andrew,

> Thinking about this more broadly, is there a Bioconductor package 
> that lets you parse out the different features listed in a 
> GenBank feature, somewhat akin to this:
>   http://www.bioperl.org/wiki/HOWTO:Feature-Annotation

  You may want to take a look into the genoPlotR package from CRAN.
  It allows you to read GenBank files directly and to extract your
  features of interest from the resulting data.frame.

Hth

Gerhard

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Dr. Gerhard Thallinger             E-mail:  Gerhard.Thallinger at tugraz.at
Institute for Genomics and Bioinformatics   Web: http://genome.tugraz.at
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