[BioC] [XPS] integrating data processed outside of XPS into the tree

[cstrato]

Dear Thomas,

I was looking at the source code of fRMA, which currently supports only 
"hgu133a", "hgu133plus2", "mouse4302" arrays, and realized that it is 
not possible for  me to support fRMA, since it depends on pre-calculated 
public-domain data which you need, e.g. hgu133afrmavecs. For this reason 
I cannot support fRMA. However, keep in mind that fRMA still uses RMA as 
algorithm.

Best regards
Christian


On 9/24/11 1:32 AM, thomas sierocinski wrote:
> Dear All, Dear Christian,
>
> I'm using XPS to process/analyse human Exon arrays.
> I would like to use fRMA (frozen Robust MultiArray Analysis) to
> normalize/summarize the data.
> I'd like to know if is there a way to summarize/normalize data using
> fRMA in XPS.
> More generally, is there a way to process the data by other methods (non
> supported by XPS) and then use it in the XPS framework?
>
> Cheers,
>
> Thomas
>
>
>