[BioC] Bacterial genome annotation package using AnnotationDbi?

Sang Chul Choi schoi at cornell.edu
Wed Apr 4 23:24:15 CEST 2012


Hi,

I am wondering if I could create AnnotationDbi packages with bacterial genomes: e.g., Annotation Package: org.EcK12.eg.db.  

I am considering the following genome:
Streptococcus agalactiae NEM316 (NC_004368.1) can be found at http://www.ncbi.nlm.nih.gov/genome/186?project_id=61585

Are there ways of using preexisting BioC R package that I can use to fetch the annotation of the bacteria? Do I have to make one from scratch using AnnotationDbi or something similar?

I will appreciate any help.

Thank you,

SangChul



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