[BioC] mapping information \"QualityScore\" appears missing in lumiHumanIDMapping versions 1.8.0 and 1.10.0

Holger [guest] guest at bioconductor.org
Thu Apr 12 15:30:37 CEST 2012


Dear List,

it seems that (at least the windows binaries) of packages lumiHumanIDMapping version 1.8.0 and 1.10.0 miss some mapping information. Examplarily the "QualityScore" is not availabe. However, within the pdf manual this information is still described

Thanks for any information about that!
Holger

> require(lumiHumanIDMapping)
> conn <- lumiHumanIDMapping_dbconn()
> dbListFields(conn, 'nuID_MappingInfo')
[1] "nuID"      "Accession" "EntrezID"  "Symbol"  

 -- output of sessionInfo(): 

> sessionInfo()
R version 2.14.0 (2011-10-31)
Platform: i386-pc-mingw32/i386 (32-bit)

locale:
[1] LC_COLLATE=German_Germany.1252  LC_CTYPE=German_Germany.1252    LC_MONETARY=German_Germany.1252 LC_NUMERIC=C                   
[5] LC_TIME=German_Germany.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] lumiHumanIDMapping_1.10.0 RSQLite_0.10.0            DBI_0.2-5                 AnnotationDbi_1.16.5     
[5] lumi_2.6.0                nleqslv_1.9.0             methylumi_2.0.1           Biobase_2.14.0           

loaded via a namespace (and not attached):
 [1] affy_1.32.0           affyio_1.22.0         annotate_1.32.0       BiocInstaller_1.2.1   grid_2.14.0          
 [6] hdrcde_2.15           IRanges_1.12.3        KernSmooth_2.23-6     lattice_0.20-0        MASS_7.3-16          
[11] Matrix_1.0-1          mgcv_1.7-9            nlme_3.1-102          preprocessCore_1.16.0 tools_2.14.0         
[16] xtable_1.6-0          zlibbioc_1.0.0       

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